Data Simulation & Basis Set Generation
This is a list of simulation software.
Generates simulated spectra of triglycerides with unsaturated fatty acids as would be acquired with a TE series with PRESS localization. The fatty acid chain length can be specified.
|Developer||Ronald Ouwerkerk, NIDDK/NIH, Bethesda MD, USA|
|Credit||If you would be so kind to acknowledge me as the source of this software when you use it for a publication it will be much appreciated.|
VDI (Visual Display Interface) is a collection of MATLAB libraries created to visualize and process multiresolution data, such as MRS, MRSI, fMRI and anatomical MRI. An additional sub-library called SpinTool (independently available for download) can be used to easily and quickly write Bloch simulations and simulations of J-coupled spins.
|Credit||Please cite the software package using the APS style or equivalent (Tal, A (2020). Visual Display Interface (VDI) [Computer Software]. Retrieved from http://www.vdisoftware.net)|
The FID Appliance (FID-A) is an open-source software package for simulation of MRS experiments, design and analysis of radiofrequency (RF) pulses, and processing of MRS data.
Classic NMR simulation library.
|Developer||Brian J. Soher|
|Credit||Proper reference should be given, using the citation below, when GAMMA simulations are used in papers and/or presentations: 'Computer Simulations in Magnetic Resonance. An Object Oriented Programming Approach', S.A. Smith, T.O. Levante, B.H. Meier, and R.R. Ernst, J. Magn. Reson., 106a.|
jMRUI is a software package for advanced time-domain analysis of magnetic resonance spectroscopy (MRS) and spectroscopic imaging (MRSI) data.
|Developer||MRUI consortium (http://www.jmrui.eu/about/coordinator-developers/)|
|License||Closed-source proprietary free for non-commercial use (http://www.jmrui.eu/license-and-download/jmrui-license/)|
A novel software package for fast and computationally efficient basis set simulation.
|Developer||Christoph Juchem, Karl Landheer|
|License||Closed-source, limited-term academic license|
Spinach is a fast (polynomial complexity scaling for liquid state NMR) open-source spin dynamics simulation library that supports NMR, EPR, MRI, DNP, MAS, Optimal Control, PHIP, singlet state NMR, and other forms of Magnetic Resonance spectroscopy.
|Credit||If you are using Spinach, cite appropriate papers from http://spindynamics.org/wiki/index.php?title=Appendix_C:_literature_citations|
The open source Vespa suite contains four magnetic resonance (MR) spectroscopy software applications: RFPulse (for RF pulse design), Simulation (for spectral simulation), DataSim (for creating synthetic MRS data) and Analysis (for spectral data processing and analysis).
|Developer||Brian J. Soher|
|Credit||Please reference the following publication if you use this software: Soher BJ et.al. Vespa: Integrated applications for RF pulse design, spectral simulation and MRS data analysis. 19th Meeting ISMRM, Montreal 2011|